STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ54534.1Urea transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (305 aa)    
Predicted Functional Partners:
SEQ54573.1
Urea transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.974
SEP92326.1
L-leucine ABC transporter ATP-binding protein.
 
 0.970
SEQ81645.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
 0.966
SEQ54503.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
 
 0.962
SEQ54647.1
Urea transport system ATP-binding protein.
 
 
 0.943
SEQ54614.1
Urea transport system ATP-binding protein.
 
 0.936
SEQ81582.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
 
 0.931
SEP92295.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.929
SEQ81700.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 
 0.917
SEP92247.1
L-leucine-binding protein /L-isoleucine-binding protein /L-valine-binding protein.
 
 
 0.888
Your Current Organism:
Pseudomonas cuatrocienegasensis
NCBI taxonomy Id: 543360
Other names: CIP 109853, LMG 24676, LMG:24676, P. cuatrocienegasensis, Pseudomonas cuatrocienegasensis Escalante et al. 2009, Pseudomonas sp. 1N, Pseudomonas sp. 3N, strain 1N
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