STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ84538.1Lipopolysaccharide kinase (Kdo/WaaP) family protein. (476 aa)    
Predicted Functional Partners:
tsaD
N6-L-threonylcarbamoyladenine synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 0.997
SEQ84631.1
Heptose I phosphotransferase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
 
  
  0.909
SEQ84656.1
UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase.
 
  
  0.908
SEQ84569.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
 
   
 0.899
SEQ84411.1
Carbamoyltransferase.
 
     0.849
SEQ84313.1
O-antigen ligase.
 
  
  0.820
SEQ84689.1
Heptosyltransferase-1.
 
  
 0.817
SEQ60812.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
 
   
 0.802
SEP91275.1
Monothiol glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
    
 
 0.784
SEQ84375.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
  0.779
Your Current Organism:
Pseudomonas cuatrocienegasensis
NCBI taxonomy Id: 543360
Other names: CIP 109853, LMG 24676, LMG:24676, P. cuatrocienegasensis, Pseudomonas cuatrocienegasensis Escalante et al. 2009, Pseudomonas sp. 1N, Pseudomonas sp. 3N, strain 1N
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