TSAR_000859 protein (Trichomalopsis sarcophagae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TSAR_000859

Cyclic nucleotide-binding domain-containing protein. (679 aa)

Predicted Functional Partners:

TSAR_004105

0.582

TSAR_002794

0.580

TSAR_002133

0.578

TSAR_000309

0.549

TSAR_012633

0.508

TSAR_007084

0.508

TSAR_012887

0.494

TSAR_015744

0.494

TSAR_009732

0.472

TSAR_001991

0.472

Your Current Organism:

Trichomalopsis sarcophagae

NCBI taxonomy Id: 543379
Other names: T. sarcophagae

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TSAR_000309	TSAR_000859	A0A232F4T8	A0A232EZ95	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.549
TSAR_000309	TSAR_002133	A0A232F4T8	A0A232F4N6	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.549
TSAR_000309	TSAR_002794	A0A232F4T8	A0A232EL75	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.549
TSAR_000309	TSAR_004105	A0A232F4T8	A0A232F5B0	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.549
TSAR_000859	TSAR_000309	A0A232EZ95	A0A232F4T8	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.549
TSAR_000859	TSAR_001991	A0A232EZ95	A0A232F412	Cyclic nucleotide-binding domain-containing protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.472
TSAR_000859	TSAR_002133	A0A232EZ95	A0A232F4N6	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.578
TSAR_000859	TSAR_002794	A0A232EZ95	A0A232EL75	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.580
TSAR_000859	TSAR_004105	A0A232EZ95	A0A232F5B0	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.582
TSAR_000859	TSAR_007084	A0A232EZ95	A0A232EX86	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the potassium channel family.	0.508
TSAR_000859	TSAR_009732	A0A232EZ95	A0A232F0F8	Cyclic nucleotide-binding domain-containing protein.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.472
TSAR_000859	TSAR_012633	A0A232EZ95	A0A232ERB2	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the potassium channel family.	0.508
TSAR_000859	TSAR_012887	A0A232EZ95	A0A232F1S9	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.494
TSAR_000859	TSAR_015744	A0A232EZ95	A0A232F8H8	Cyclic nucleotide-binding domain-containing protein.	EF-hand domain-containing protein.	0.494
TSAR_001991	TSAR_000859	A0A232F412	A0A232EZ95	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Cyclic nucleotide-binding domain-containing protein.	0.472
TSAR_001991	TSAR_002794	A0A232F412	A0A232EL75	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Cyclic nucleotide-binding domain-containing protein.	0.472
TSAR_001991	TSAR_004105	A0A232F412	A0A232F5B0	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Cyclic nucleotide-binding domain-containing protein.	0.472
TSAR_001991	TSAR_009732	A0A232F412	A0A232F0F8	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.560
TSAR_002133	TSAR_000309	A0A232F4N6	A0A232F4T8	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.549
TSAR_002133	TSAR_000859	A0A232F4N6	A0A232EZ95	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.578