TSAR_004634 protein (Trichomalopsis sarcophagae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TSAR_004634

Uncharacterized protein. (1664 aa)

Predicted Functional Partners:

TSAR_002586

0.994

TSAR_005055

0.994

TSAR_004241

0.992

TSAR_004561

0.992

TSAR_009507

0.980

TSAR_004073

0.973

TSAR_008583

0.973

TSAR_011521

0.920

TSAR_005290

0.813

TSAR_015341

0.813

Your Current Organism:

Trichomalopsis sarcophagae

NCBI taxonomy Id: 543379
Other names: T. sarcophagae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TSAR_002586	TSAR_004073	A0A232F3N5	A0A232EM37	Gamma-tubulin complex component.	Uncharacterized protein.	0.981
TSAR_002586	TSAR_004241	A0A232F3N5	A0A232EUY2	Gamma-tubulin complex component.	Gamma-tubulin complex component.	0.993
TSAR_002586	TSAR_004561	A0A232F3N5	A0A232FEK4	Gamma-tubulin complex component.	Uncharacterized protein.	0.991
TSAR_002586	TSAR_004634	A0A232F3N5	A0A232FBK8	Gamma-tubulin complex component.	Uncharacterized protein.	0.994
TSAR_002586	TSAR_005055	A0A232F3N5	A0A232F7J2	Gamma-tubulin complex component.	Uncharacterized protein.	0.997
TSAR_002586	TSAR_005290	A0A232F3N5	A0A232EFS8	Gamma-tubulin complex component.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.817
TSAR_002586	TSAR_008583	A0A232F3N5	A0A232EZ37	Gamma-tubulin complex component.	Gamma-tubulin complex component.	0.981
TSAR_002586	TSAR_009507	A0A232F3N5	A0A232EVW5	Gamma-tubulin complex component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.992
TSAR_002586	TSAR_011521	A0A232F3N5	A0A232F9P5	Gamma-tubulin complex component.	Tubulin domain-containing protein; Belongs to the tubulin family.	0.969
TSAR_002586	TSAR_015341	A0A232F3N5	A0A232EKE4	Gamma-tubulin complex component.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.817
TSAR_004073	TSAR_002586	A0A232EM37	A0A232F3N5	Uncharacterized protein.	Gamma-tubulin complex component.	0.981
TSAR_004073	TSAR_004241	A0A232EM37	A0A232EUY2	Uncharacterized protein.	Gamma-tubulin complex component.	0.985
TSAR_004073	TSAR_004561	A0A232EM37	A0A232FEK4	Uncharacterized protein.	Uncharacterized protein.	0.976
TSAR_004073	TSAR_004634	A0A232EM37	A0A232FBK8	Uncharacterized protein.	Uncharacterized protein.	0.973
TSAR_004073	TSAR_005055	A0A232EM37	A0A232F7J2	Uncharacterized protein.	Uncharacterized protein.	0.979
TSAR_004073	TSAR_005290	A0A232EM37	A0A232EFS8	Uncharacterized protein.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.813
TSAR_004073	TSAR_009507	A0A232EM37	A0A232EVW5	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.983
TSAR_004073	TSAR_011521	A0A232EM37	A0A232F9P5	Uncharacterized protein.	Tubulin domain-containing protein; Belongs to the tubulin family.	0.920
TSAR_004073	TSAR_015341	A0A232EM37	A0A232EKE4	Uncharacterized protein.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.813
TSAR_004241	TSAR_002586	A0A232EUY2	A0A232F3N5	Gamma-tubulin complex component.	Gamma-tubulin complex component.	0.993