TSAR_001882 protein (Trichomalopsis sarcophagae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TSAR_001882

CABIT domain-containing protein. (522 aa)

Predicted Functional Partners:

TSAR_004285

0.447

TSAR_003237

0.410

TSAR_002830

0.410

TSAR_002495

0.410

TSAR_004783

0.410

Your Current Organism:

Trichomalopsis sarcophagae

NCBI taxonomy Id: 543379
Other names: T. sarcophagae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TSAR_001882	TSAR_002495	A0A232FJR1	A0A232F9E2	CABIT domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.410
TSAR_001882	TSAR_002830	A0A232FJR1	A0A232EYX3	CABIT domain-containing protein.	Uncharacterized protein.	0.410
TSAR_001882	TSAR_003237	A0A232FJR1	A0A232EPF8	CABIT domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.410
TSAR_001882	TSAR_004285	A0A232FJR1	A0A232F2J5	CABIT domain-containing protein.	Thioredoxin; Belongs to the thioredoxin family.	0.447
TSAR_001882	TSAR_004783	A0A232FJR1	A0A232FCP1	CABIT domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.410
TSAR_002495	TSAR_001882	A0A232F9E2	A0A232FJR1	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	CABIT domain-containing protein.	0.410
TSAR_002495	TSAR_004285	A0A232F9E2	A0A232F2J5	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Thioredoxin; Belongs to the thioredoxin family.	0.443
TSAR_002830	TSAR_001882	A0A232EYX3	A0A232FJR1	Uncharacterized protein.	CABIT domain-containing protein.	0.410
TSAR_002830	TSAR_004285	A0A232EYX3	A0A232F2J5	Uncharacterized protein.	Thioredoxin; Belongs to the thioredoxin family.	0.443
TSAR_003237	TSAR_001882	A0A232EPF8	A0A232FJR1	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	CABIT domain-containing protein.	0.410
TSAR_003237	TSAR_004285	A0A232EPF8	A0A232F2J5	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Thioredoxin; Belongs to the thioredoxin family.	0.443
TSAR_004285	TSAR_001882	A0A232F2J5	A0A232FJR1	Thioredoxin; Belongs to the thioredoxin family.	CABIT domain-containing protein.	0.447
TSAR_004285	TSAR_002495	A0A232F2J5	A0A232F9E2	Thioredoxin; Belongs to the thioredoxin family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.443
TSAR_004285	TSAR_002830	A0A232F2J5	A0A232EYX3	Thioredoxin; Belongs to the thioredoxin family.	Uncharacterized protein.	0.443
TSAR_004285	TSAR_003237	A0A232F2J5	A0A232EPF8	Thioredoxin; Belongs to the thioredoxin family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.443
TSAR_004285	TSAR_004783	A0A232F2J5	A0A232FCP1	Thioredoxin; Belongs to the thioredoxin family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.443
TSAR_004783	TSAR_001882	A0A232FCP1	A0A232FJR1	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	CABIT domain-containing protein.	0.410
TSAR_004783	TSAR_004285	A0A232FCP1	A0A232F2J5	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Thioredoxin; Belongs to the thioredoxin family.	0.443