STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Htur_1460PFAM: Protein of unknown function DUF2223; Glycoside hydrolase 97; KEGG: sml:Smlt1176 putative alpha-glucosidase protein. (1255 aa)    
Predicted Functional Partners:
Htur_2652
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ade:Adeh_2906 alpha amylase, catalytic region.
 
  
 0.943
Htur_2647
Glucoamylase and related glycosyl hydrolase- like protein; KEGG: scl:sce4102 glucan 1,4-alpha-glucosidase.
 
  
  0.937
Htur_2110
PFAM: alpha amylase catalytic region; Domain of unknown function DUF1939; SMART: alpha amylase catalytic sub domain; KEGG: similar to AF208225_3 alpha-amylase AmyA; K01176 alpha-amylase.
  
  
 0.924
Htur_2845
KEGG: rhi:NGR_b03150 hypothetical protein.
  
     0.639
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.556
Htur_3724
PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: scl:sce2650 hypothetical protein.
  
     0.526
Htur_2399
PFAM: glycoside hydrolase family 3 domain protein; Twin-arginine translocation pathway, signal sequence; KEGG: cps:CPS_2365 xylosidase/arabinosidase.
  
     0.489
Htur_1229
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; KEGG: bbr:BB0121 NAD dependent epimerase/dehydratase family protein.
  
     0.488
Htur_1461
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pha:PSHAa2154 efflux pump.
       0.444
Htur_1459
TIGRFAM: methyltransferase FkbM family; KEGG: dda:Dd703_4024 methyltransferase FkbM family.
       0.424
Your Current Organism:
Haloterrigena turkmenica
NCBI taxonomy Id: 543526
Other names: H. turkmenica DSM 5511, Haloterrigena turkmenica ATCC 51198, Haloterrigena turkmenica DSM 5511, Haloterrigena turkmenica str. DSM 5511, Haloterrigena turkmenica strain DSM 5511
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.