close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16676.1PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mpt:Mpe_A0048 hypothetical protein. (242 aa)    
Predicted Functional Partners:
clsB
Phospholipase D/Transphosphatidylase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
 
    0.937
ACS16674.1
KEGG: mpt:Mpe_A0046 hypothetical protein.
 
  
 0.906
clsB-2
Phospholipase D/Transphosphatidylase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
 
    0.816
ACS18309.1
KEGG: mpt:Mpe_A0046 hypothetical protein.
 
  
 0.751
ACS18543.1
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mms:mma_2535 selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
   0.721
ACS20545.1
PFAM: aminotransferase class V; KEGG: aav:Aave_0206 aminotransferase, class V.
   
   0.721
ACS21193.1
KEGG: pcr:Pcryo_0954 hypothetical protein.
  
  
 0.464
ACS18421.1
PFAM: CsbD family protein; KEGG: efe:EFER_4136 putative stress response protein; Belongs to the UPF0337 (CsbD) family.
  
     0.462
ACS22153.1
PFAM: OmpA/MotB domain protein; SmpA/OmlA domain protein; KEGG: reu:Reut_B5847 OmpA/MotB:SmpA/OmlA.
  
  
 0.457
ACS18385.1
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2516 putative lipoprotein transmembrane.
   
    0.450
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.