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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16686.1PFAM: Inner membrane CreD family protein; KEGG: bcj:BCAM1996 inner membrane protein CreD. (493 aa)    
Predicted Functional Partners:
ACS16689.1
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pna:Pnap_0029 sensory histidine kinase CreC.
 
   
 0.745
ACS18671.1
KEGG: pol:Bpro_0584 hypothetical protein.
   
    0.681
ACS18188.1
KEGG: vei:Veis_4945 hypothetical protein.
  
     0.661
ACS16687.1
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: pol:Bpro_0780 penicillin-binding protein 1A.
       0.622
ACS20210.1
PFAM: YadA domain protein; Hep_Hag repeat-containing protein; Haemagluttinin domain protein; KEGG: bpl:BURPS1106A_2083 putative outer membrane protein.
  
     0.571
ACS21264.1
PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_6196 hypothetical protein.
  
    0.569
ACS21265.1
PFAM: Dual specificity protein phosphatase; KEGG: smt:Smal_3658 putative dual specificity phosphatase.
  
     0.567
ACS22152.1
PFAM: YadA domain protein; Hep_Hag repeat-containing protein; Haemagluttinin domain protein; KEGG: ara:Arad_7994 outer membrane pathogenesis protein.
  
     0.567
ACS21032.1
PFAM: protein of unknown function UPF0027; KEGG: pna:Pnap_0498 hypothetical protein.
  
     0.558
ACS18189.1
KEGG: vei:Veis_4946 hypothetical protein.
  
     0.512
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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