close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16698.1KEGG: pnu:Pnuc_0952 hypothetical protein. (292 aa)    
Predicted Functional Partners:
ACS16697.1
KEGG: mch:Mchl_5008 phosphopantetheine-binding.
       0.767
ACS16696.1
PFAM: Beta-ketoacyl synthase; KEGG: dar:Daro_1172 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.740
ACS16700.1
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two-component sensor kinase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_0042 integral membrane sensor signal transduction histidine kinase.
 
     0.671
ACS16695.1
PFAM: GCN5-related N-acetyltransferase; KEGG: psa:PST_2720 acetyltransferase (GNAT) family protein.
       0.556
ACS17588.1
PFAM: ribonuclease II; KEGG: ajs:Ajs_3654 ribonuclease II.
  
    0.547
ACS16699.1
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aav:Aave_0041 two component transcriptional regulator.
       0.539
ACS20135.1
PFAM: heat shock protein Hsp20; KEGG: pol:Bpro_3264 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
  
     0.498
ACS18497.1
PFAM: phosphopantetheine-binding; KEGG: dar:Daro_1173 phosphopantetheine-binding.
 
     0.462
ACS19776.1
Porin; KEGG: vei:Veis_1304 porin.
  
     0.460
ACS21870.1
KEGG: dia:Dtpsy_3448 putative transmembrane protein.
  
     0.433
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.