close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16772.1KEGG: bra:BRADO2589 hypothetical protein. (237 aa)    
Predicted Functional Partners:
ACS16773.1
KEGG: reh:H16_B0884 2-oxopent-4-enoate hydratase.
       0.551
ACS16774.1
PFAM: Amidase; KEGG: reh:H16_B0883 amidase.
       0.551
ACS16775.1
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_0558 TRAP dicarboxylate transporter-DctM subunit.
       0.502
ACS16776.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pol:Bpro_0557 hypothetical protein.
       0.502
ACS16777.1
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_0556 TRAP dicarboxylate transporter-DctP subunit.
       0.495
ACS20599.1
PFAM: Domain of unknown function DUF1801; KEGG: pol:Bpro_1381 hypothetical protein.
  
     0.471
ACS16771.1
Adenylate/guanylate cyclase with integral membrane sensor; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sfu:Sfum_2802 adenylate/guanylate cyclase.
       0.450
ACS21255.1
PFAM: 2OG-Fe(II) oxygenase; KEGG: dac:Daci_3795 2OG-Fe(II) oxygenase.
 
     0.422
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.