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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16799.1KEGG: rfr:Rfer_4043 hypothetical protein. (166 aa)    
Predicted Functional Partners:
ACS22569.1
KEGG: mpt:Mpe_A1028 hypothetical protein.
  
     0.640
glsA
PFAM: Glutaminase, core; KEGG: sme:SMc00486 glutaminase; Belongs to the glutaminase family.
       0.581
ACS16801.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_0122 protein of unknown function DUF6, transmembrane.
       0.581
ACS18643.1
KEGG: aav:Aave_0313 hypothetical protein.
  
     0.580
ACS18420.1
KEGG: ajs:Ajs_0255 hypothetical protein.
  
     0.574
ACS20815.1
PFAM: FlgN family protein; KEGG: bmj:BMULJ_00209 flagella synthesis protein.
  
     0.562
ACS16802.1
PFAM: transport-associated; KEGG: cvi:CV_3234 hypothetical protein.
       0.537
ACS16803.1
PFAM: flavin reductase domain protein FMN-binding; KEGG: pna:Pnap_0092 flavin reductase domain-containing protein.
       0.511
ACS20632.1
KEGG: azo:azo0570 hypothetical protein.
  
     0.498
ACS17137.1
KEGG: pol:Bpro_4483 protein of unknown function DUF132.
  
     0.492
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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