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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16801.1PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_0122 protein of unknown function DUF6, transmembrane. (299 aa)    
Predicted Functional Partners:
glsA
PFAM: Glutaminase, core; KEGG: sme:SMc00486 glutaminase; Belongs to the glutaminase family.
       0.793
ACS16803.1
PFAM: flavin reductase domain protein FMN-binding; KEGG: pna:Pnap_0092 flavin reductase domain-containing protein.
       0.731
ACS16802.1
PFAM: transport-associated; KEGG: cvi:CV_3234 hypothetical protein.
       0.709
ACS16799.1
KEGG: rfr:Rfer_4043 hypothetical protein.
       0.581
ACS16758.1
TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vei:Veis_0734 oxidoreductase FAD/NAD(P)-binding subunit.
  
   
 0.460
ACS16804.1
PFAM: nucleoside recognition domain protein; KEGG: psa:PST_4050 hypothetical protein.
       0.458
ACS16756.1
TIGRFAM: benzoyl-CoA-dihydrodiol lyase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dac:Daci_0074 enoyl-CoA hydratase.
  
 
   0.400
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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