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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16820.1Transcriptional regulator, histidine utilization repressor, GntR family; KEGG: aav:Aave_2966 histidine utilization repressor; TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH. (245 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.947
hutH
KEGG: pol:Bpro_1043 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
  
 0.938
ACS16826.1
PFAM: protein of unknown function DUF886; KEGG: pol:Bpro_1036 protein of unknown function DUF886.
 
  
 0.926
hutI
KEGG: pol:Bpro_1035 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3.
 
  
 0.905
ACS16828.1
TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: pol:Bpro_1034 N-formimino-L-glutamate deiminase.
 
  
 0.813
ACS16817.1
KEGG: pol:Bpro_1047 extracellular solute-binding protein, family 3.
  
    0.753
ACS16818.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1046 binding-protein-dependent transport systems inner membrane component.
  
    0.750
ACS16819.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1045 ABC transporter related.
  
    0.740
ACS16829.1
TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase; KEGG: hypothetical protein.
 
  
 0.673
ACS17444.1
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: vei:Veis_1903 UbiC transcription regulator-associated domain-containing protein.
  
   
 0.651
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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