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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16865.1KEGG: bpa:BPP0708 hypothetical protein. (109 aa)    
Predicted Functional Partners:
ACS16866.1
PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein.
       0.773
ACS16867.1
PFAM: pentapeptide repeat protein; KEGG: spe:Spro_4190 pentapeptide repeat-containing protein.
       0.773
ACS16868.1
KEGG: bpt:Bpet4111 hypothetical protein.
       0.528
ACS16864.1
TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: bbr:BB0793 hypothetical protein.
       0.484
ACS16869.1
KEGG: spe:Spro_4188 hypothetical protein.
       0.476
ACS16860.1
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: bbr:BB0804 hypothetical protein.
       0.449
ACS16861.1
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bpt:Bpet4112 hypothetical protein.
       0.449
ACS16862.1
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: bpt:Bpet4110 hypothetical protein.
       0.449
ACS16863.1
Type VI secretion ATPase, ClpV1 family; KEGG: bpt:Bpet4107 putative ATPase with chaperone activity; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
       0.449
ACS16859.1
PFAM: virulence protein SciE type; KEGG: bpt:Bpet4114 hypothetical protein.
       0.400
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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