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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16868.1KEGG: bpt:Bpet4111 hypothetical protein. (206 aa)    
Predicted Functional Partners:
ACS16869.1
KEGG: spe:Spro_4188 hypothetical protein.
 
     0.929
ACS16866.1
PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein.
 
     0.903
ACS16867.1
PFAM: pentapeptide repeat protein; KEGG: spe:Spro_4190 pentapeptide repeat-containing protein.
 
     0.880
ACS19487.1
PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein.
 
     0.802
ACS17195.1
PFAM: pentapeptide repeat protein; KEGG: scl:sce4933 hypothetical protein.
 
     0.799
ACS17198.1
KEGG: spe:Spro_4188 hypothetical protein.
 
     0.784
ACS20399.1
KEGG: spe:Spro_4188 hypothetical protein.
 
     0.784
ACS19490.1
KEGG: spe:Spro_4188 hypothetical protein.
 
     0.781
ACS20396.1
PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein.
 
     0.780
ACS20397.1
PFAM: pentapeptide repeat protein; KEGG: bbr:BB0796 hypothetical protein.
 
     0.753
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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