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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16888.1KEGG: aav:Aave_2835 hypothetical protein. (144 aa)    
Predicted Functional Partners:
ACS16669.1
KEGG: bbr:BB3068 hypothetical protein.
  
     0.690
ACS19512.1
PFAM: protein of unknown function DUF330; KEGG: mms:mma_1055 hypothetical protein.
  
     0.638
ACS16887.1
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dia:Dtpsy_0186 protein of unknown function DUF224 cysteine-rich region domain protein.
       0.544
ACS16886.1
PFAM: FAD linked oxidase domain protein; KEGG: dac:Daci_0304 FAD linked oxidase domain-containing protein.
       0.495
ACS16885.1
PFAM: FAD linked oxidase domain protein; KEGG: aav:Aave_0645 FAD linked oxidase domain-containing protein.
       0.446
ACS22854.1
KEGG: har:HEAR2686 putative universal stress protein (Usp).
  
     0.440
ACS20775.1
KEGG: bam:Bamb_3105 hypothetical protein.
  
     0.422
ACS19513.1
PFAM: Mammalian cell entry related domain protein; KEGG: mms:mma_1054 paraquat-inducible protein B.
  
     0.418
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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