STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16890.1PFAM: protein of unknown function DUF6 transmembrane; KEGG: rfr:Rfer_0486 hypothetical protein. (296 aa)    
Predicted Functional Partners:
ACS16889.1
Peroxiredoxin; PFAM: glutathione peroxidase; KEGG: pna:Pnap_0128 glutathione peroxidase; Belongs to the glutathione peroxidase family.
  
    0.786
ACS16891.1
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 hypothetical protein.
       0.593
ACS17154.1
PFAM: sodium/hydrogen exchanger; KEGG: aav:Aave_0435 sodium/hydrogen exchanger.
 
  
 0.525
ACS18122.1
KEGG: rfr:Rfer_1400 hypothetical protein.
 
     0.510
ACS18993.1
KEGG: dia:Dtpsy_1955 putative transmembrane protein.
  
     0.489
ACS21004.1
KEGG: pol:Bpro_1244 putative transmembrane protein.
  
     0.479
ACS18992.1
KEGG: ajs:Ajs_1766 putative transmembrane protein.
  
     0.451
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.449
ACS21331.1
PFAM: Thioredoxin domain; KEGG: reu:Reut_B4067 thioredoxin.
 
 
 0.428
ACS17727.1
PFAM: General secretion pathway L; KEGG: pol:Bpro_1326 hypothetical protein.
  
     0.420
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.