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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16911.1TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: xop:PXO_05538 rhs repeat family. (1434 aa)    
Predicted Functional Partners:
ACS16912.1
KEGG: xoo:XOO1635 hypothetical protein.
 
  
 0.924
ACS21341.1
Cyclic nucleotide-binding protein; PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_3844 beta-lactamase-like.
   
    0.811
ACS16913.1
TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: bxe:Bxe_A4429 rhs element Vgr protein.
 
  
 0.766
ACS18581.1
PFAM: sugar transferase; KEGG: ajs:Ajs_3034 undecaprenyl-phosphate galactose phosphotransferase.
   
    0.744
ACS16910.1
KEGG: bxe:Bxe_B1284 hypothetical protein.
       0.581
ACS20533.1
Magnesium-translocating P-type ATPase; KEGG: pfl:PFL_4078 magnesium-transporting ATPase MgtA; TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase.
  
  
 0.535
ACS18189.1
KEGG: vei:Veis_4946 hypothetical protein.
  
    0.512
ACS18913.1
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04092 TPR repeat-containing protein.
 
  
 0.475
ACS18919.1
YD repeat protein; KEGG: sdn:Sden_3683 peptidoglycan-binding LysM; TIGRFAM: YD repeat protein; PFAM: Peptidoglycan-binding LysM; YD repeat-containing protein; SMART: Peptidoglycan-binding LysM.
 
  
0.474
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.464
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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