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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16959.1PFAM: protein of unknown function DUF330; KEGG: pol:Bpro_0233 putative lipoprotein. (227 aa)    
Predicted Functional Partners:
ACS16960.1
PFAM: Mammalian cell entry related domain protein; KEGG: dia:Dtpsy_0246 mammalian cell entry related domain protein.
 
   0.977
ACS16961.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0231 ABC transporter related.
 
    0.953
ACS16962.1
PFAM: protein of unknown function DUF140; KEGG: dia:Dtpsy_0244 protein of unknown function DUF140.
 
  
 0.943
ACS16958.1
KEGG: har:HEAR0765 hypothetical protein.
 
     0.691
ACS21692.1
KEGG: pna:Pnap_1828 hypothetical protein.
  
     0.625
ACS21389.1
KEGG: pol:Bpro_0444 hypothetical protein.
  
     0.619
ACS17605.1
KEGG: cti:RALTA_A2653 putative histone H1/H5 family protein, HCT subfamily.
  
     0.601
ACS20787.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.594
ACS20999.1
KEGG: pol:Bpro_1248 hypothetical protein.
  
     0.582
ACS21714.1
KEGG: dac:Daci_0832 putative lipoprotein transmembrane.
  
     0.573
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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