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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS16992.1PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rpa:RPA4432 NHL repeat-containing protein. (553 aa)    
Predicted Functional Partners:
ACS17031.1
PFAM: Ricin B lectin; PKD domain containing protein; SMART: Ricin B lectin; PKD domain containing protein; KEGG: scl:sce8906 hypothetical protein.
 
 
 0.853
ACS20199.1
PFAM: Di-haem cytochrome c peroxidase; KEGG: bxe:Bxe_B0346 putative cytochrome c peroxidase.
  
 
 0.714
ACS20358.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: aav:Aave_3729 amino acid adenylation domain-containing protein.
  
  
 0.682
ACS18983.1
KEGG: bja:bll2395 hypothetical protein.
  
     0.623
ACS18803.1
KEGG: har:HEAR2872 hypothetical protein.
 
   
 0.615
ACS19481.1
KEGG: sml:Smlt0344 hypothetical protein.
  
     0.613
ACS20136.1
KEGG: har:HEAR2872 hypothetical protein.
 
   
 0.609
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.601
ACS18186.1
Azurin; Transfers electrons from cytochrome c551 to cytochrome oxidase.
    
 
 0.596
ACS19506.1
KEGG: dal:Dalk_1996 transcriptional regulator, ArsR family.
 
    0.581
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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