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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17003.1Xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bam:Bamb_4197 xylulokinase; Belongs to the FGGY kinase family. (508 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: lch:Lcho_0132 xylulokinase.
  
  
 
0.924
ACS17157.1
KEGG: pna:Pnap_3660 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.923
ACS19647.1
KEGG: mpt:Mpe_A2786 ribulose-5-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.923
ACS17004.1
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bpy:Bphyt_3233 alcohol dehydrogenase GroES domain protein.
 
  
 0.920
ACS17763.1
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: lch:Lcho_0134 mannitol dehydrogenase domain-containing protein.
    
 0.911
ACS21925.1
PFAM: protein of unknown function DUF718; KEGG: bph:Bphy_6338 hypothetical protein.
  
  
 0.833
ACS22705.1
TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: pst:PSPTO_3565 gluconate permease.
 
  
 0.690
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.534
ACS17005.1
PFAM: inner-membrane translocator; KEGG: bac:BamMC406_4722 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.519
ACS21244.1
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: aav:Aave_4199 LacI family transcription regulator.
 
 
 
 0.503
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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