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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17037.1PFAM: carbohydrate kinase FGGY; KEGG: ret:RHE_PB00071 L-xylulose kinase protein; Belongs to the FGGY kinase family. (495 aa)    
Predicted Functional Partners:
ACS17039.1
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rsk:RSKD131_4320 transcriptional regulator, GntR family.
 
   
 0.861
ACS17038.1
PFAM: FAD dependent oxidoreductase; KEGG: oan:Oant_2918 FAD dependent oxidoreductase.
 
  
 0.849
ACS21925.1
PFAM: protein of unknown function DUF718; KEGG: bph:Bphy_6338 hypothetical protein.
  
  
 0.833
ACS17036.1
KEGG: ara:Arad_8598 sugar ABC transporter.
 
  
 0.800
ACS17033.1
PFAM: aldo/keto reductase; KEGG: sme:SM_b20500 putative aldoketo reductase protein.
 
  
 0.707
ACS17032.1
PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: oan:Oant_3078 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase.
 
  
 0.668
ACS17034.1
PFAM: inner-membrane translocator; KEGG: rle:pRL120758 putative permease component of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.649
ACS22705.1
TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: pst:PSPTO_3565 gluconate permease.
 
  
 0.591
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.567
rbsA-2
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
  
 0.546
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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