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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17040.1PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_4618 protein of unknown function DUF6, transmembrane. (296 aa)    
Predicted Functional Partners:
ACS22384.1
PFAM: amidohydrolase 2; KEGG: pol:Bpro_0242 amidohydrolase 2.
  
     0.636
uvrA
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.626
ACS18184.1
KEGG: pol:Bpro_1716 hypothetical protein.
  
     0.538
ACS18697.1
PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_1614 glycosyl transferase, group 1.
  
  
 0.527
ACS21290.1
TIGRFAM: phasin family protein; KEGG: bxe:Bxe_B0720 phasin.
  
     0.460
ACS17042.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
    0.441
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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