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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudJPFAM: NUDIX hydrolase; KEGG: aav:Aave_4725 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily. (159 aa)    
Predicted Functional Partners:
ACS17052.1
KEGG: sml:Smlt1455 hypothetical protein.
       0.728
ACS20790.1
PFAM: flagellar biosynthesis protein FliO; KEGG: reu:Reut_B5882 flagellar biosynthesis protein, FliO.
 
   
 0.584
ACS21864.1
PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: dia:Dtpsy_3306 peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; Belongs to the peptidase M24B family.
 
   
 0.564
ACS18069.1
KEGG: aav:Aave_1218 putative transmembrane protein.
 
  
 0.556
ACS17053.1
Two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; response regulator receiver; SMART: response regulator receiver; KEGG: dac:Daci_5416 two component transcriptional regulator.
       0.543
ACS19476.1
PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ.
 
     0.526
cobD
Cobalamin biosynthesis protein CbiB; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
  
    0.510
ftsL
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.480
ACS21761.1
KEGG: rfr:Rfer_0366 hypothetical protein.
  
     0.462
ACS17604.1
PFAM: PfkB domain protein; KEGG: pna:Pnap_3388 ribokinase-like domain-containing protein.
 
   
 0.451
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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