close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17096.1PFAM: PepSY-associated TM helix domain protein; KEGG: dac:Daci_2267 PepSY-associated TM helix domain-containing protein. (433 aa)    
Predicted Functional Partners:
ACS17097.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dia:Dtpsy_2068 TonB-dependent siderophore receptor.
 
  
 0.886
ACS19021.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mpt:Mpe_A1495 TonB-dependent siderophore receptor, putative.
 
  
 0.529
ACS21631.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: rso:RSc0800 putative ferrisiderophore receptor signal peptide protein.
 
  
 0.516
ACS17098.1
PFAM: glutamine amidotransferase class-II; KEGG: ajs:Ajs_0335 glutamine amidotransferase, class-II.
       0.486
ACS18707.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_2896 TonB-dependent receptor.
 
   
 0.486
ACS21378.1
PFAM: protein of unknown function DUF461; nuclear export factor GLE1; KEGG: smd:Smed_1186 protein of unknown function DUF461.
  
    0.448
ACS19653.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo2978 putative TonB-dependent receptor.
 
   
 0.429
ACS17099.1
PFAM: Extracellular ligand-binding receptor; KEGG: lch:Lcho_1126 extracellular ligand-binding receptor.
       0.401
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.