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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17132.1PFAM: YceI family protein; KEGG: lch:Lcho_0457 YceI family protein; Belongs to the UPF0312 family. (211 aa)    
Predicted Functional Partners:
ACS17134.1
PFAM: cytochrome B561; KEGG: lch:Lcho_0459 cytochrome b561.
 
  
 0.851
ACS17133.1
PFAM: YceI family protein; KEGG: lch:Lcho_0458 YceI family protein; Belongs to the UPF0312 family.
 
    
0.779
ACS17131.1
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eba:ebA6561 putative amino acid efflux protein.
       0.735
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.527
ACS17135.1
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: azo:azo3438 putative virulence regulator protein.
       0.459
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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