close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17168.1PFAM: Radical SAM domain protein; KEGG: xau:Xaut_1935 radical SAM domain-containing protein. (366 aa)    
Predicted Functional Partners:
ACS17169.1
PFAM: glycosyl transferase family 2; KEGG: bid:Bind_0088 glycosyl transferase family protein.
       0.780
ACS17167.1
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: mgm:Mmc1_2695 filamentous haemagglutinin family outer membrane protein.
  
    0.743
ACS17166.1
PFAM: Polypeptide-transport-associated domain protein ShlB-type; surface antigen variable number repeat protein; KEGG: cak:Caul_4107 polypeptide-transport-associated domain-containing protein.
       0.736
ACS22809.1
Nitrous oxide expression regulator, NosR; PFAM: FMN-binding domain protein; KEGG: pna:Pnap_3961 regulatory protein, putative.
  
  
 0.576
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
  
  
 0.499
pqqD
Coenzyme PQQ synthesis D; Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway.
  
  
 0.495
pqqB
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
  
  
 0.446
pqqB-2
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
  
  
 0.446
ACS22276.1
PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal.
  
  
 0.430
ACS19907.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
     
 0.421
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.