STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vapar_0531TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: pae:PA0095 hypothetical protein (1003 aa)    
Predicted Functional Partners:
Vapar_0530
Type VI secretion ATPase, ClpV1 family; KEGG: azo:azo3903 putative ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; SMART: AAA ATPase
 
  
 0.951
Vapar_0527
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: azo:azo3901 putative cytoplasmic protein, SciC
 
  
 0.916
Vapar_0528
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: azo:azo3902 putative cytoplasmic protein, SciB
 
  
 0.914
Vapar_0526
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: lch:Lcho_4087 type VI secretion system lysozyme-related protein
 
  
 0.907
Vapar_0525
PFAM: virulence protein SciE type; KEGG: azo:azo3899 putative cytoplasmic protein,SciE
 
    0.898
Vapar_0544
FHA domain containing protein; KEGG: azo:azo3884 regulatory protein; TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein
 
 
 
 0.867
Vapar_0532
PFAM: pentapeptide repeat protein; KEGG: scl:sce4933 hypothetical protein
 
   
 0.866
Vapar_0514
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bpa:BPP0728 hypothetical protein
 
  
 0.840
Vapar_0516
TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: azo:azo3890 ImcF-like protein
 
  
 0.839
Vapar_0515
TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bpt:Bpet4103 hypothetical protein
 
  
 0.829
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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