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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17272.1PFAM: porin Gram-negative type; KEGG: vei:Veis_4644 porin. (400 aa)    
Predicted Functional Partners:
ACS17255.1
KEGG: aav:Aave_4527 putative proline rich signal peptide protein.
  
     0.725
ACS18190.1
KEGG: aav:Aave_1927 hypothetical protein.
  
     0.709
ACS21714.1
KEGG: dac:Daci_0832 putative lipoprotein transmembrane.
  
     0.674
ACS22474.1
PFAM: porin Gram-negative type; KEGG: bch:Bcen2424_6141 porin.
  
  
 
0.666
ACS18992.1
KEGG: ajs:Ajs_1766 putative transmembrane protein.
  
     0.655
ACS17603.1
TIGRFAM: MJ0042 family finger-like protein; KEGG: dac:Daci_1497 zinc finger-domain-containing protein.
  
     0.649
ACS20050.1
PFAM: NlpBDapX family lipoprotein; KEGG: rfr:Rfer_2096 NlpBDapX lipoprotein.
  
   
 0.642
ACS19828.1
PFAM: porin Gram-negative type; KEGG: pol:Bpro_4383 putative porin precursor transmembrane protein.
  
  
 
0.640
ACS17808.1
PFAM: VacJ family lipoprotein; KEGG: rfr:Rfer_2938 VacJ-like lipoprotein.
   
 
 0.616
ACS18028.1
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain-containing protein.
  
     0.609
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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