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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17403.1PFAM: domain of unknown function DUF1745; KEGG: rfr:Rfer_0622 hypothetical protein. (426 aa)    
Predicted Functional Partners:
ACS17402.1
KEGG: aav:Aave_4509 hypothetical protein.
 
     0.836
ACS20729.1
KEGG: pna:Pnap_0914 hypothetical protein.
  
     0.707
ACS19715.1
KEGG: vei:Veis_3631 hypothetical protein.
  
     0.668
ACS18284.1
KEGG: rfr:Rfer_2980 putative signal peptide protein.
  
     0.602
ACS21390.1
KEGG: dia:Dtpsy_0437 hypothetical protein.
 
     0.586
ACS20954.1
KEGG: pol:Bpro_1295 putative lipoprotein.
  
     0.564
ACS17401.1
Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_4233 transcriptional regulator, GntR family.
 
     0.539
ACS17626.1
PFAM: dihydroneopterin aldolase; KEGG: rfr:Rfer_0814 dihydroneopterin aldolase.
  
     0.534
ACS21719.1
KEGG: pol:Bpro_4643 protein of unknown function DUF1631.
  
     0.501
ACS21798.1
PFAM: regulatory protein MarR; KEGG: dia:Dtpsy_3350 transcriptional regulator, MarR family.
  
     0.492
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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