close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17483.1TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4071 polar amino acid ABC transporter, inner membrane subunit. (229 aa)    
Predicted Functional Partners:
ACS17484.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4070 ABC transporter-related protein.
 0.995
ACS17481.1
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: aav:Aave_4073 extracellular solute-binding protein.
 
 0.990
ACS17482.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4072 polar amino acid ABC transporter, inner membrane subunit.
 
 
 
0.987
ACS22199.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0719 ABC transporter related.
 0.974
ACS16974.1
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dac:Daci_5673 extracellular solute-binding protein.
 
 0.964
ACS21628.1
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: lch:Lcho_4024 extracellular solute-binding protein.
 
 0.960
ACS20655.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pag:PLES_07351 putative ATP-binding component of ABC transporter.
 
 0.871
ACS22931.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RS05401 amino-acid ATP-binding ABC transporter protein.
 
 0.870
ACS22433.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2561 ABC transporter related.
 
 0.868
ACS19502.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3562 ABC transporter related.
 
 0.865
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.