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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17510.1PFAM: protein of unknown function DUF88; KEGG: mpt:Mpe_A0449 hypothetical protein. (275 aa)    
Predicted Functional Partners:
ACS17511.1
KEGG: aav:Aave_4317 putative transmembrane protein.
       0.808
ACS17509.1
PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: vei:Veis_4477 transposase IS116/IS110/IS902 family protein.
       0.634
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.619
htpX
PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: pna:Pnap_3448 heat shock protein HtpX; Belongs to the peptidase M48B family.
       0.543
ACS17508.1
PFAM: protein of unknown function DUF88; KEGG: pna:Pnap_3450 hypothetical protein.
 
    
0.525
pyrC
Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.453
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: ajs:Ajs_2395 phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.419
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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