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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17515.1PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pol:Bpro_1033 hypothetical protein. (295 aa)    
Predicted Functional Partners:
ACS17558.1
KEGG: pol:Bpro_1065 hypothetical protein.
  
     0.756
ACS19715.1
KEGG: vei:Veis_3631 hypothetical protein.
  
     0.753
ACS19356.1
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: aav:Aave_3861 response regulator receiver protein.
  
 
   0.742
ACS19382.1
KEGG: pna:Pnap_2002 hypothetical protein.
  
     0.738
ACS18365.1
KEGG: pol:Bpro_3120 putative transcriptional regulator.
  
     0.723
ACS18792.1
PFAM: glutaredoxin; KEGG: aav:Aave_2457 glutaredoxin.
 
     0.719
ACS20720.1
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like).
  
   
 0.718
ACS18028.1
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain-containing protein.
  
     0.701
ACS21082.1
PFAM: protein of unknown function DUF490; KEGG: aav:Aave_3956 hypothetical protein.
 
     0.691
ACS20954.1
KEGG: pol:Bpro_1295 putative lipoprotein.
  
     0.689
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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