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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17554.1KEGG: aav:Aave_0805 SAM-dependent methyltransferase. (406 aa)    
Predicted Functional Partners:
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.817
ACS17552.1
PFAM: protein of unknown function DUF218; KEGG: nmc:NMC2142 putative periplasmic protein.
       0.809
ACS17551.1
PFAM: protein of unknown function DUF484; KEGG: rfr:Rfer_3443 hypothetical protein.
       0.734
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.718
ACS17549.1
PFAM: DSBA oxidoreductase; KEGG: atc:AGR_pAT_622 hypothetical protein.
       0.674
ACS17548.1
KEGG: dia:Dtpsy_0855 hypothetical protein.
       0.632
ACS17555.1
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: aav:Aave_0807 cobalamin synthesis protein, P47K.
       0.581
ACS17136.1
PFAM: putative RNA methylase; THUMP domain protein; KEGG: aav:Aave_0422 putative RNA methylase; Belongs to the methyltransferase superfamily.
  
  
 0.476
ACS17547.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_1294 LysR family transcriptional regulator.
       0.463
ACS19727.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.432
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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