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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17584.1KEGG: dac:Daci_2221 hypothetical protein. (148 aa)    
Predicted Functional Partners:
ACS17149.1
KEGG: psp:PSPPH_2654 putative lipoprotein.
  
     0.680
ACS20467.1
TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin; KEGG: rme:Rmet_0614 outer membrane autotransporter barrel.
  
     0.644
ACS21383.1
KEGG: sbn:Sbal195_2514 hypothetical protein.
  
     0.641
ACS22286.1
PFAM: protein of unknown function DUF81; KEGG: dac:Daci_0936 putative integral membrane protein.
  
    0.640
ACS16920.1
PFAM: O-antigen polymerase; KEGG: har:HEAR0457 hypothetical protein.
  
     0.638
ACS21072.1
KEGG: dac:Daci_2082 hypothetical protein.
  
     0.637
ACS16835.1
KEGG: cja:CJA_0124 hypothetical protein.
  
     0.631
ACS19452.1
KEGG: dia:Dtpsy_3361 hypothetical protein.
  
     0.628
ACS17929.1
PFAM: peptidase M48 Ste24p; KEGG: pol:Bpro_3806 peptidase M48, Ste24p.
 
     0.626
ACS21916.1
Putative membrane protein involved in toxin uptake; KEGG: dac:Daci_2082 hypothetical protein.
  
     0.625
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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