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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17605.1KEGG: cti:RALTA_A2653 putative histone H1/H5 family protein, HCT subfamily. (174 aa)    
Predicted Functional Partners:
ACS19856.1
KEGG: rso:RS03060 hypothetical protein.
  
     0.732
ACS21714.1
KEGG: dac:Daci_0832 putative lipoprotein transmembrane.
  
     0.694
ACS20702.1
KEGG: pna:Pnap_0959 putative lipoprotein.
  
     0.658
ACS19859.1
KEGG: bxe:Bxe_B0802 hypothetical protein.
  
     0.635
ACS19359.1
KEGG: rfr:Rfer_2125 hypothetical protein.
  
     0.633
ACS21874.1
PFAM: Barstar (barnase inhibitor); KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor).
  
     0.619
ACS16959.1
PFAM: protein of unknown function DUF330; KEGG: pol:Bpro_0233 putative lipoprotein.
  
     0.601
ACS19858.1
PFAM: protein of unknown function DUF802; KEGG: bxe:Bxe_B0803 putative transmembrane protein.
  
     0.588
ACS18991.1
PFAM: RDD domain containing protein; KEGG: ajs:Ajs_1765 RDD domain-containing protein.
  
     0.575
ACS21369.1
PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase.
  
     0.562
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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