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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17703.1PFAM: dihydrodipicolinate synthetase; KEGG: rpi:Rpic_3006 dihydrodipicolinate synthetase; Belongs to the DapA family. (305 aa)    
Predicted Functional Partners:
ACS17702.1
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: aav:Aave_2248 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
 
 0.981
ACS18379.1
KEGG: aav:Aave_2587 5-dehydro-4-deoxyglucarate dehydratase; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; Belongs to the DapA family.
  
  
  0.952
ACS20305.1
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: pol:Bpro_3532 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
 
 0.919
ACS17701.1
PFAM: inner-membrane translocator; KEGG: aav:Aave_2249 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
       0.663
ACS17700.1
PFAM: inner-membrane translocator; KEGG: aav:Aave_2250 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.661
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.634
ACS22125.1
PFAM: dihydrodipicolinate synthetase; KEGG: acr:Acry_0196 dihydrodipicolinate synthetase; Belongs to the DapA family.
  
   
 0.555
gatC
glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
  
 0.548
ACS18268.1
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: dia:Dtpsy_1394 chorismate mutase.
  
  
 0.544
ACS17698.1
PFAM: inner-membrane translocator; KEGG: lch:Lcho_3198 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
     0.517
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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