close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17731.1TIGRFAM: general secretion pathway protein H; KEGG: aav:Aave_0924 general secretion pathway protein H. (154 aa)    
Predicted Functional Partners:
ACS17729.1
KEGG: ajs:Ajs_0672 hypothetical protein.
     
 0.826
ACS17730.1
TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: pol:Bpro_1323 general secretion pathway protein I.
  
  
 0.817
ACS17732.1
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: aav:Aave_0925 general secretion pathway protein G.
  
  
 0.817
ACS17728.1
KEGG: pol:Bpro_1325 general secretion pathway protein K.
       0.803
ACS17733.1
KEGG: dia:Dtpsy_0655 hypothetical protein.
       0.595
ACS17724.1
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ajs:Ajs_0667 general secretion pathway protein D.
     
 0.569
ACS17722.1
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: dia:Dtpsy_0642 general secretion pathway protein F.
  
  
 0.567
ACS17726.1
KEGG: aav:Aave_0919 hypothetical protein.
       0.556
ACS17727.1
PFAM: General secretion pathway L; KEGG: pol:Bpro_1326 hypothetical protein.
       0.556
ACS17725.1
KEGG: dia:Dtpsy_0647 putative general secretory pathway N transmembrane protein.
       0.553
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.