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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17858.1PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbr:BB2846 short chain dehydrogenase. (337 aa)    
Predicted Functional Partners:
ACS17971.1
KEGG: aav:Aave_1492 putative DNA topoisomerase, type I.
  
 
   0.571
ACS17680.1
PFAM: protein of unknown function DUF326; KEGG: azo:azo1773 hypothetical protein.
  
     0.523
ACS17859.1
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: aav:Aave_3702 single-stranded-DNA-specific exonuclease RecJ.
       0.503
ACS17860.1
KEGG: rfr:Rfer_3233 hypothetical protein.
  
    0.501
ACS18655.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.485
ACS20194.1
PFAM: sulfatase; KEGG: vei:Veis_2294 sulfatase.
   
 
 0.480
ACS17164.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.478
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
  
     0.433
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.420
ACS19802.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta-ketoacyl synthase; aminotransferase class-III; Acyl transferase; phosphopantetheine-binding; KEGG: bph:Bphy_1672 amino acid adenylation domain-containing protein.
  
 
 0.419
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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