close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17860.1KEGG: rfr:Rfer_3233 hypothetical protein. (322 aa)    
Predicted Functional Partners:
ACS17859.1
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: aav:Aave_3702 single-stranded-DNA-specific exonuclease RecJ.
     
 0.865
ACS19571.1
ZipA FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.757
ACS17125.1
PFAM: Sporulation domain protein; KEGG: pol:Bpro_4489 sporulation related.
  
     0.728
ACS17402.1
KEGG: aav:Aave_4509 hypothetical protein.
  
     0.709
ACS17861.1
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3232 LolC/E family lipoprotein releasing system, transmembrane protein.
       0.694
ACS21389.1
KEGG: pol:Bpro_0444 hypothetical protein.
  
     0.674
ACS21780.1
PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase.
  
     0.659
ACS21719.1
KEGG: pol:Bpro_4643 protein of unknown function DUF1631.
  
     0.651
ACS19245.1
KEGG: dac:Daci_4929 hypothetical protein.
  
     0.649
ACS17727.1
PFAM: General secretion pathway L; KEGG: pol:Bpro_1326 hypothetical protein.
  
     0.643
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.