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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17927.1KEGG: xcc:XCC0033 hypothetical protein. (106 aa)    
Predicted Functional Partners:
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.669
ACS21411.1
KEGG: aav:Aave_2153 hypothetical protein.
  
     0.649
ACS17584.1
KEGG: dac:Daci_2221 hypothetical protein.
  
     0.600
ACS20369.1
KEGG: aav:Aave_3997 hypothetical protein.
  
     0.579
ACS19142.1
KEGG: bur:Bcep18194_B0491 hypothetical protein.
  
     0.578
ACS17013.1
TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated.
  
     0.529
ACS17969.1
KEGG: bpt:Bpet3484 hypothetical protein.
  
     0.487
ACS18018.1
PFAM: outer membrane porin; KEGG: pen:PSEEN2388 porin, OprD family.
  
     0.471
ACS20719.1
PFAM: AsmA family protein; KEGG: pol:Bpro_0883 AsmA.
  
     0.459
ACS17925.1
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aav:Aave_3439 acyl-CoA dehydrogenase domain-containing protein.
       0.455
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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