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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmBTIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: vei:Veis_1757 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (77 aa)    
Predicted Functional Partners:
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: dac:Daci_5366 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 0.999
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.994
ACS18947.1
TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: aav:Aave_2635 50S ribosomal protein L31P; Belongs to the bacterial ribosomal protein bL31 family.
 
 
 0.991
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: aav:Aave_1181 50S ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.
 
 
 0.990
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
 
 0.990
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.990
rpmI
TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pol:Bpro_2104 LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.
 
 
 0.990
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: aav:Aave_3674 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
 
 
 0.990
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.989
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.989
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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