close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17948.1PFAM: NUDIX hydrolase; KEGG: vei:Veis_1027 NUDIX hydrolase. (192 aa)    
Predicted Functional Partners:
ACS17949.1
PFAM: SirA family protein; KEGG: dia:Dtpsy_2384 SirA family protein; Belongs to the sulfur carrier protein TusA family.
       0.861
ACS17947.1
TIGRFAM: cysteine synthase B; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pol:Bpro_3726 cysteine synthase B; Belongs to the cysteine synthase/cystathionine beta- synthase family.
       0.858
ACS17945.1
PFAM: NAD-dependent epimerase/dehydratase; KEGG: aav:Aave_1978 NAD-dependent epimerase/dehydratase.
       0.469
ACS17946.1
KEGG: met:M446_1288 hypothetical protein.
       0.469
ACS18128.1
PFAM: NUDIX hydrolase; KEGG: dac:Daci_5341 NUDIX hydrolase.
 
   
 0.415
ACS18662.1
PFAM: NUDIX hydrolase; KEGG: pna:Pnap_2817 NUDIX hydrolase.
 
   
0.404
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.