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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS17953.1Procollagen-proline dioxygenase; KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit. (279 aa)    
Predicted Functional Partners:
ACS20201.1
KEGG: bxe:Bxe_B0348 procollagen-proline,2-oxoglutarate-4-dioxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit.
 
  
 
0.912
ACS19677.1
Prolyl aminopeptidase; PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_1698 prolyl aminopeptidase; Belongs to the peptidase S33 family.
     
  0.900
ACS21298.1
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: rso:RS00361 ornithine cyclodeaminase.
     
  0.900
ACS21415.1
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.900
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
  0.900
ACS21822.1
4-hydroxyproline epimerase; PFAM: proline racemase; KEGG: vei:Veis_1044 proline racemase; Belongs to the proline racemase family.
     
  0.900
ACS17954.1
PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold.
       0.773
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
       0.773
ACS17952.1
PFAM: protein of unknown function DUF328; KEGG: aav:Aave_1172 hypothetical protein; Belongs to the UPF0246 family.
       0.562
ACS21229.1
PFAM: CheW domain protein; KEGG: pol:Bpro_1138 CheW-like protein.
  
     0.516
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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