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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18000.1TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; KEGG: ajs:Ajs_3480 tRNA 2-selenouridine synthase; Belongs to the SelU family. (356 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.875
mnmC
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
  
  
 0.736
ACS17998.1
PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002805 putative acetyltransferase protein.
       0.668
ACS17999.1
PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_3143 GCN5-related N-acetyltransferase.
       0.668
ACS17997.1
KEGG: bbt:BBta_6235 hypothetical protein.
       0.585
ACS17996.1
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ara:Arad_4739 amino acid efflux protein.
     
 0.553
ACS18001.1
Hypothetical protein; KEGG: rpe:RPE_2275 peptidase C14, caspase catalytic subunit P20.
       0.540
ACS18002.1
PFAM: ribonuclease H; KEGG: pol:Bpro_4830 ribonuclease H.
       0.519
ACS18003.1
KEGG: dac:Daci_1103 hypothetical protein.
       0.434
ACS18699.1
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: lch:Lcho_1723 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
 
     0.414
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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