ACS18037.1 protein (Variovorax paradoxus S110)

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Score

ACS18037.1

PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein. (185 aa)

Predicted Functional Partners:

rpmF

0.960

rpsC

0.958

rplD

0.909

rpsF

0.899

rpsB

0.899

rpsP

0.898

infC

0.898

rplA

0.896

rplK

0.893

rplU

0.893

Your Current Organism:

Variovorax paradoxus S110

NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACS18037.1	infC	Vapar_1386	Vapar_1871	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.898
ACS18037.1	rplA	Vapar_1386	Vapar_0585	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.896
ACS18037.1	rplD	Vapar_1386	Vapar_4912	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.909
ACS18037.1	rplK	Vapar_1386	Vapar_0584	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.893
ACS18037.1	rplU	Vapar_1386	Vapar_4218	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.893
ACS18037.1	rpmF	Vapar_1386	Vapar_1387	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: aav:Aave_1181 50S ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.960
ACS18037.1	rpsB	Vapar_1386	Vapar_2599	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.899
ACS18037.1	rpsC	Vapar_1386	Vapar_4907	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.958
ACS18037.1	rpsF	Vapar_1386	Vapar_1818	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.899
ACS18037.1	rpsP	Vapar_1386	Vapar_1473	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: vei:Veis_3939 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.898
infC	ACS18037.1	Vapar_1871	Vapar_1386	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	PFAM: protein of unknown function DUF177; KEGG: aav:Aave_1180 hypothetical protein.	0.898
infC	rplA	Vapar_1871	Vapar_0585	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.953
infC	rplD	Vapar_1871	Vapar_4912	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.938
infC	rplK	Vapar_1871	Vapar_0584	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.929
infC	rplU	Vapar_1871	Vapar_4218	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.944
infC	rpmF	Vapar_1871	Vapar_1387	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: aav:Aave_1181 50S ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.931
infC	rpsB	Vapar_1871	Vapar_2599	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.986
infC	rpsC	Vapar_1871	Vapar_4907	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.981
infC	rpsF	Vapar_1871	Vapar_1818	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.977
infC	rpsP	Vapar_1871	Vapar_1473	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: vei:Veis_3939 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.971