Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACS18090.1KEGG: dac:Daci_2439 hypothetical protein. (137 aa)    
Predicted Functional Partners:
ACS18089.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dac:Daci_2438 XRE family transcriptional regulator.
 
     0.881
ACS20601.1
Membrane protein-like protein; KEGG: scl:sce5075 hypothetical protein.
  
     0.616
ACS21588.1
KEGG: mxa:MXAN_6210 hypothetical protein.
  
     0.591
ACS18350.1
PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_6940 putative acetyltransferase.
  
     0.553
ACS19008.1
KEGG: pla:Plav_1985 hypothetical protein.
  
     0.550
ACS21916.1
Putative membrane protein involved in toxin uptake; KEGG: dac:Daci_2082 hypothetical protein.
  
     0.549
ACS18983.1
KEGG: bja:bll2395 hypothetical protein.
  
     0.548
ACS19801.1
KEGG: mes:Meso_2586 hypothetical protein.
  
     0.538
ACS21072.1
KEGG: dac:Daci_2082 hypothetical protein.
  
     0.510
ACS20255.1
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sal:Sala_0828 antibiotic biosynthesis monooxygenase.
  
     0.501
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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