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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18120.1PFAM: protein of unknown function DUF47; KEGG: dia:Dtpsy_2707 protein of unknown function DUF47. (214 aa)    
Predicted Functional Partners:
ACS18121.1
PFAM: phosphate transporter; KEGG: dia:Dtpsy_2706 phosphate transporter.
 
  
 0.995
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: vei:Veis_1757 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.604
ACS18119.1
TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: rfr:Rfer_2508 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase.
       0.570
ACS21903.1
Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.558
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
    0.547
ACS18942.1
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
    
 0.519
ACS18117.1
TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: rfr:Rfer_2511 chromosomal replication initiator, DnaA; Belongs to the DnaA family.
  
    0.472
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
  
 0.465
ACS19024.1
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: vei:Veis_4313 thiamine biosynthesis protein ThiS.
  
     0.444
ACS18993.1
KEGG: dia:Dtpsy_1955 putative transmembrane protein.
  
     0.418
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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