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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18179.1PFAM: type II secretion system protein E; KEGG: nmu:Nmul_A2354 type II secretion system protein E. (457 aa)    
Predicted Functional Partners:
ACS18180.1
PFAM: type II secretion system protein; KEGG: pol:Bpro_2556 type II secretion system protein.
 
  
 0.983
ACS18181.1
PFAM: type II secretion system protein; KEGG: eba:ebA3702 type II secretion system protein.
 
  
 0.976
ACS18178.1
KEGG: pol:Bpro_2554 response regulator receiver domain protein (CheY-like).
 
  
 0.951
ACS21059.1
PFAM: type II secretion system protein; KEGG: bpy:Bphyt_1656 type II secretion system protein.
 
  
 0.930
ACS21060.1
PFAM: type II secretion system protein; KEGG: bxe:Bxe_A2794 putative tight adherence TadC related transmembrane protein.
 
  
 0.917
ACS18170.1
PFAM: type II and III secretion system protein; transport-associated; KEGG: eba:ebA3713 outer membrane channel protein; Belongs to the bacterial secretin family.
 
  
 0.908
ACS18176.1
PFAM: TadE family protein; KEGG: reu:Reut_A2654 TadE-like.
 
  
 0.903
ACS18169.1
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bph:Bphy_5320 Flp pilus assembly protein CpaB.
 
  
 0.901
ACS21056.1
PFAM: type II and III secretion system protein; KEGG: bxe:Bxe_A2798 putative outer membrane channel signal peptide protein, CpaC like; Belongs to the bacterial secretin family.
  
 0.885
ACS21055.1
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: cti:RALTA_B0192 putative Flp pilus assembly CpaB.
 
  
 0.872
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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