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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18224.1TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pna:Pnap_1503 TRAP dicarboxylate transporter, DctM subunit. (594 aa)    
Predicted Functional Partners:
ACS18225.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pna:Pnap_1504 tripartite ATP-independent periplasmic transporter DctQ.
 
  
 0.961
ACS18223.1
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.807
ACS21555.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mms:mma_0126 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
 0.806
ACS21554.1
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.796
ACS18226.1
PFAM: protein of unknown function DUF323; KEGG: pna:Pnap_1506 hypothetical protein.
       0.491
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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